Included
- Shopify payout reconciliation
- Sales, fees, refunds, and discount categorization
- Bank and credit-card reconciliation
- Monthly P&L, balance sheet, and cash-flow reports
- Exception follow-up on unclear transactions
Shopify Bookkeeping
Shopify Bookkeeping Services for Clear Monthly Reports
NenoBooks helps Shopify and DTC store owners reconcile payouts, categorize sales and fees, and deliver clear monthly reports.
- Shopify payout reconciliation
- Bank and card reconciliation
- Monthly P&L, balance sheet, and cash-flow report
Built for US-based Shopify sellers who need books that match what actually hit the bank—not just the sales dashboard.
Payout matched to deposit
Fees and refunds categorized
Monthly reports ready
The payout gap
Why Shopify deposits can be hard to read
Shopify payouts rarely equal gross sales. Fees, refunds, chargebacks, discounts, and processor timing sit between the order and the bank deposit. When those pieces stay bundled, your bank feed looks right and your profit picture does not.
Shopify bookkeeping services separate payout activity, categorize store and processor records, and reconcile accounts so monthly reports reflect the real business.
Store sales vs bank deposit
Illustrative example for explanation only — not customer data, and not a fee schedule.
Store sales (example)
$10,000
- Fees
- Refunds
- Chargebacks
- Discount adjustments
Actual Shopify payout
Less than sales
Bank deposit
What you actually receive
Scope
What NenoBooks provides
Shopify-focused work within our broader monthly bookkeeping services. Selling across Amazon, marketplaces, or multiple channels? See ecommerce bookkeeping.
Optional
- Catch-up or cleanup of prior Shopify months
- Inventory and COGS categorization support
- Accounts payable and receivable tracking
- CPA or tax-adviser handoff packaging
Not included
Clear service boundaries
- Sales-tax filing, remittance, or nexus advice
- Payroll processing or payroll tax filings
- Tax preparation, audits, or legal advice
- Inventory valuation opinions reserved for your accountant
- CPA firm attestation or licensed accounting opinions
Every month
What a monthly close looks like
Each month you get reconciled payouts, categorized store activity, and reports ready for owner review.
Shopify payout reconciliation
Monthly close| Item | Status |
|---|---|
| Shopify payout batch matched to bank deposit | Reconciled |
| Processing fees categorized | Complete |
| Refunds and chargebacks reviewed | Complete |
| Credit-card statement matched | Reconciled |
| Open owner questions | Listed for follow-up |
What you receive
Bookkeeping deliverables
Reconciled accounts
- Shopify payouts matched to deposits
- Bank accounts reconciled
- Credit cards reconciled
Categorized records
- Sales and discounts
- Fees, refunds, and chargebacks
- Store and operating expenses
Monthly reports
- Profit & loss
- Balance sheet
- Cash-flow report
Adviser handoff
- Organized books for your CPA
- Supporting schedules for your CPA
- Notes for tax or year-end review
Problems solved
Challenges we address
Payout vs bank deposit gaps
Problem
Deposits do not match gross sales.
Process
Reconcile payout batches to the bank.
Outcome
Deposits you can explain.
Processor fee clutter
Problem
Fees bury true margin.
Process
Categorize processor and Shopify fees separately.
Outcome
Clearer expense visibility.
Refunds, discounts, chargebacks
Problem
Adjustments scramble revenue.
Process
Map each type consistently.
Outcome
Cleaner net sales history.
Inventory and COGS questions
Problem
Product costs blur into operating expenses.
Process
Categorize inventory and COGS in the monthly books.
Outcome
Books ready for your accountant's review.
Catch-up and cleanup
Problem
Months of unfinished Shopify books.
Process
Repair prior periods, then move to monthly service.
Outcome
Current books. See catch-up bookkeeping.
Sales-tax boundaries
Problem
Owners expect filing and remittance from the bookkeeper.
Process
Keep sales-tax records organized; filing stays with your tax professional.
Outcome
Clear roles and cleaner handoffs.
Fit
Who this is for
US-based Shopify and DTC store owners who need reconciled payouts and monthly reports without hiring a full-time bookkeeper.
Also explore online bookkeeping or about NenoBooks.
Shopify-first brands
Ready to share store and bank records
DTC sellers
Who want clearer monthly P&L and cash views
Owners preparing books for their CPA
Preparing books for a CPA or tax adviser
Process
How it works
01
Review your store
We discuss Shopify volume, processors, and current bookkeeping status.
02
Share your records
You provide store, bank, and accounting access needed for monthly work.
03
Reconcile and categorize
We reconcile payouts and accounts, then resolve open questions with you.
04
Deliver reports
You receive monthly reports and we continue the workflow.
Why NenoBooks
Why choose NenoBooks
Clear Shopify scope
You know what payout reconciliation and reporting include—and what stays with your tax professional.
Built for payout workflows
Work centers on deposits, fees, refunds, and processor activity that confuse store owners.
CPA-ready handoffs
Organized books and reports ready to share with your CPA or tax adviser.
Practical monthly reporting
P&L, balance sheet, and cash-flow views tied to reconciled accounts.
Try before you commit
Start a free trial or book a free call to see if NenoBooks fits your store.
Systems
Software, systems, and collaboration
We work in Xero, QuickBooks Online, FreshBooks, Wave, Sage, and Zoho Books alongside your Shopify store records. Collaboration uses secure shared access—never passwords sent by email.
Xero
QuickBooks Online
FreshBooks
Wave
Sage
Zoho Books
Shopify
01Shopify payouts
02Processor fees
03Bank deposits
04Bookkeeping review
05Monthly reports
Secure shared access — never passwords sent by email.
Plans & engagement
Pricing
Plans depend on order volume, processors, and bookkeeping complexity. Start a free trial or book a free call to find the right fit—or see bookkeeping pricing.
Ready for clearer Shopify monthly reports?
Start a free trial or book a free call to talk through Shopify bookkeeping for your store.